2FVY
High Resolution Glucose Bound Crystal Structure of GGBP
- PDB DOI: https://doi.org/10.2210/pdb2FVY/pdb
- Classification: TRANSPORT PROTEIN
- Organism(s): Escherichia coli
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2006-01-31 Released: 2007-02-06
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 0.92 Å
- R-Value Free: 0.130
- R-Value Work: 0.110
- R-Value Observed: 0.118
This is version 2.4 of the entry. See complete history.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| D-galactose-binding periplasmic protein | 309 | Escherichia coli | Mutation(s): 0 Gene Names: mglB |  | |
UniProt | |||||
Find proteins for P0AEE5 (Escherichia coli (strain K12)) Explore P0AEE5 Go to UniProtKB: P0AEE5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P0AEE5 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 5 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| BGC Query on BGC | B [auth A] | beta-D-glucopyranose C6 H12 O6 WQZGKKKJIJFFOK-VFUOTHLCSA-N |  | ||
| GOL Query on GOL | F [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| ACT Query on ACT | D [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
| CO2 Query on CO2 | E [auth A] | CARBON DIOXIDE C O2 CURLTUGMZLYLDI-UHFFFAOYSA-N |  | ||
| CA Query on CA | C [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 0.92 Å
- R-Value Free: 0.130
- R-Value Work: 0.110
- R-Value Observed: 0.118
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 119.989 | α = 90 |
| b = 36.238 | β = 124.5 |
| c = 80.101 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SHELXL-97 | refinement |
| SCALEPACK | data scaling |
| AMoRE | phasing |
| CNS | refinement |
| HKL-2000 | data collection |
| HKL-2000 | data reduction |
Entry History
Deposition Data
- Released Date: 2007-02-06 Deposition Author(s): Borrok, M.J., Kiessling, L.L., Forest, K.T.
Revision History (Full details and data files)
- Version 1.0: 2007-02-06
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Atomic model, Version format compliance - Version 1.3: 2019-07-24
Changes: Data collection, Derived calculations, Refinement description - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary - Version 2.1: 2020-09-02
Changes: Structure summary - Version 2.2: 2020-10-21
Changes: Derived calculations - Version 2.3: 2024-02-14
Changes: Data collection, Database references - Version 2.4: 2024-04-03
Changes: Refinement description
