3L9Y

Crystal structures of holo and Cu-deficient Cu/ZnSOD from the silkworm Bombyx mori and the implications in Amyotrophic lateral sclerosis

PDB DOI: https://doi.org/10.2210/pdb3L9Y/pdb

Classification: OXIDOREDUCTASE
Organism(s): Bombyx mori
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2010-01-06 Released: 2010-03-23
Deposition Author(s): Zhang, N.-N., He, Y.-X., Li, W.-F., Zhao, F., Yan, L.-F., Zhang, G.-Z., Teng, Y.-B., Yu, J., Chen, Y., Zhou, C.-Z.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free: 0.258
R-Value Work: 0.223
R-Value Observed: 0.225

wwPDB Validation 3D Report Full Report

This is version 1.5 of the entry. See complete history.

Literature

Crystal structures of holo and Cu-deficient Cu/Zn-SOD from the silkworm Bombyx mori and the implications in amyotrophic lateral sclerosis.

Zhang, N.N., He, Y.X., Li, W.F., Teng, Y.B., Yu, J., Chen, Y., Zhou, C.Z.

(2010) Proteins 78: 1999-2004

PubMed: 20310068 Search on PubMed
DOI: https://doi.org/10.1002/prot.22709
Primary Citation of Related Structures:
3L9E, 3L9Y

Organizational Affiliation

Hefei National Laboratory for Physical Sciences at Microscale and School of Life Sciences, University of Science and Technology of China, Anhui, People's Republic of China.

Macromolecule Content

Total Structure Weight: 31.9 kDa
Atom Count: 2,367
Modelled Residue Count: 307
Deposited Residue Count: 308
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Superoxide dismutase [Cu-Zn]	A, B	154	Bombyx mori	Mutation(s): 2 Gene Names: SOD1 EC: 1.15.1.1
UniProt
Find proteins for P82205 (Bombyx mori) Explore P82205 Go to UniProtKB: P82205
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P82205
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN Query on ZN Download Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain E [auth B] MOL2 format, chain C [auth A] MOL2 format, chain E [auth B]	C [auth A], E [auth B]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Focus chain E [auth B] Interactions & Density Focus chain C [auth A] Focus chain E [auth B]
CU Query on CU Download Ideal Coordinates CCD File SDF format, chain D [auth A] SDF format, chain F [auth B] MOL2 format, chain D [auth A] MOL2 format, chain F [auth B]	D [auth A], F [auth B]	COPPER (II) ION Cu JPVYNHNXODAKFH-UHFFFAOYSA-N		Interactions Focus chain D [auth A] Focus chain F [auth B] Interactions & Density Focus chain D [auth A] Focus chain F [auth B]