Download MendeleyStructure of a PduT homolog from a novel bacterial microcompartment
Greenleaf, W.B., Fan, Y., Axen, S., Volkart, L., Gu, M., Joachimiak, A., Kerfeld, C.To be published.
3NWG
The crystal structure of a microcomparments protein from Desulfitobacterium hafniense DCB
- PDB DOI: https://doi.org/10.2210/pdb3NWG/pdb
- Classification: STRUCTURAL PROTEIN
- Organism(s): Desulfitobacterium hafniense DCB-2
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2010-07-09 Released: 2010-09-22
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.70 Å
- R-Value Free: 0.283
- R-Value Work: 0.223
- R-Value Observed: 0.226
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Microcompartments protein | 182 | Desulfitobacterium hafniense DCB-2 | Mutation(s): 0 Gene Names: Dhaf_0360 |  | |
UniProt | |||||
Find proteins for B8G1Q4 (Desulfitobacterium hafniense (strain DSM 10664 / DCB-2)) Explore B8G1Q4 Go to UniProtKB: B8G1Q4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | B8G1Q4 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | B [auth A], C [auth A], D [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.70 Å
- R-Value Free: 0.283
- R-Value Work: 0.223
- R-Value Observed: 0.226
- Space Group: P 63 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 104.862 | α = 90 |
| b = 104.862 | β = 90 |
| c = 81.309 | γ = 120 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| SHELXD | phasing |
| MLPHARE | phasing |
| RESOLVE | model building |
| HKL-3000 | phasing |
| REFMAC | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| RESOLVE | phasing |
Entry History
Deposition Data
- Released Date: 2010-09-22 Deposition Author(s): Fan, Y., Volkart, L., Gu, M., Axen, S., Greenleaf, W.B., Kerfeld, C., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2010-09-22
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-10-25
Changes: Author supporting evidence, Refinement description
