4DXD

Staphylococcal Aureus FtsZ in complex with 723


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.01 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.188 
  • R-Value Observed: 0.189 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history


Literature

Restoring methicillin-resistant Staphylococcus aureus susceptibility to beta-lactam antibiotics.

Tan, C.M.Therien, A.G.Lu, J.Lee, S.H.Caron, A.Gill, C.J.Lebeau-Jacob, C.Benton-Perdomo, L.Monteiro, J.M.Pereira, P.M.Elsen, N.L.Wu, J.Deschamps, K.Petcu, M.Wong, S.Daigneault, E.Kramer, S.Liang, L.Maxwell, E.Claveau, D.Vaillancourt, J.Skorey, K.Tam, J.Wang, H.Meredith, T.C.Sillaots, S.Wang-Jarantow, L.Ramtohul, Y.Langlois, E.Landry, F.Reid, J.C.Parthasarathy, G.Sharma, S.Baryshnikova, A.Lumb, K.J.Pinho, M.G.Soisson, S.M.Roemer, T.

(2012) Sci Transl Med 4: 126ra35-126ra35

  • DOI: https://doi.org/10.1126/scitranslmed.3003592
  • Primary Citation of Related Structures:  
    4DXD

  • PubMed Abstract: 

    Despite the need for new antibiotics to treat drug-resistant bacteria, current clinical combinations are largely restricted to β-lactam antibiotics paired with β-lactamase inhibitors. We have adapted a Staphylococcus aureus antisense knockdown strategy to genetically identify the cell division Z ring components-FtsA, FtsZ, and FtsW-as β-lactam susceptibility determinants of methicillin-resistant S. aureus (MRSA). We demonstrate that the FtsZ-specific inhibitor PC190723 acts synergistically with β-lactam antibiotics in vitro and in vivo and that this combination is efficacious in a murine model of MRSA infection. Fluorescence microscopy localization studies reveal that synergy between these agents is likely to be elicited by the concomitant delocalization of their cognate drug targets (FtsZ and PBP2) in MRSA treated with PC190723. A 2.0 Å crystal structure of S. aureus FtsZ in complex with PC190723 identifies the compound binding site, which corresponds to the predominant location of mutations conferring resistance to PC190723 (PC190723(R)). Although structural studies suggested that these drug resistance mutations may be difficult to combat through chemical modification of PC190723, combining PC190723 with the β-lactam antibiotic imipenem markedly reduced the spontaneous frequency of PC190723(R) mutants. Multiple MRSA PC190723(R) FtsZ mutants also displayed attenuated virulence and restored susceptibility to β-lactam antibiotics in vitro and in a mouse model of imipenem efficacy. Collectively, these data support a target-based approach to rationally develop synergistic combination agents that mitigate drug resistance and effectively treat MRSA infections.


  • Organizational Affiliation

    Infectious Diseases, Merck Research Laboratories, Kenilworth, NJ 07033, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cell division protein FtsZ396Staphylococcus aureusMutation(s): 0 
Gene Names: ftsZ
UniProt
Find proteins for P0A031 (Staphylococcus aureus)
Explore P0A031 
Go to UniProtKB:  P0A031
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0A031
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
GDP
Query on GDP

Download Ideal Coordinates CCD File 
B [auth A]GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
9PC
Query on 9PC

Download Ideal Coordinates CCD File 
C [auth A]3-[(6-chloro[1,3]thiazolo[5,4-b]pyridin-2-yl)methoxy]-2,6-difluorobenzamide
C14 H8 Cl F2 N3 O2 S
INYJNSBDHOVLAH-UHFFFAOYSA-N
Binding Affinity Annotations 
IDSourceBinding Affinity
9PC BindingDB:  4DXD IC50: 55 (nM) from 1 assay(s)
EC50: 4000 (nM) from 1 assay(s)
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.01 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.188 
  • R-Value Observed: 0.189 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 67.715α = 90
b = 54.65β = 106.75
c = 84.496γ = 90
Software Package:
Software NamePurpose
XSCALEdata scaling
BUSTER-TNTrefinement
PDB_EXTRACTdata extraction
XDSdata scaling
PHASERphasing
BUSTERrefinement

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2012-05-23
    Type: Initial release
  • Version 1.1: 2024-02-28
    Changes: Data collection, Database references, Derived calculations