Download MendeleyInsights into the light-induced molecular switch of the bacteriophytochrome RpBphP1 probed by SAXS, modelling and UV-Vis optical properties
Papiz, M.Z., Bellini, D.To be published.
5OY5
Monomeric crystal structure of RpBphP1 photosensory core domain from the bacterium Rhodopseudomonas palustris
- PDB DOI: https://doi.org/10.2210/pdb5OY5/pdb
- Classification: PHOTOSYNTHESIS
- Organism(s): Rhodopseudomonas palustris CGA009
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2017-09-07 Released: 2019-02-06
- Funding Organization(s): Biotechnology and Biological Sciences Research Council, STFC Darebury Laboratory
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.60 Å
- R-Value Free: 0.242
- R-Value Work: 0.192
- R-Value Observed: 0.194
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| BphP1 | 525 | Rhodopseudomonas palustris CGA009 | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for A0A161I5N6 (Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)) Explore A0A161I5N6 Go to UniProtKB: A0A161I5N6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A161I5N6 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| BLA Query on BLA | B [auth A] | BILIVERDINE IX ALPHA C33 H34 N4 O6 GWZYPXHJIZCRAJ-SRVCBVSDSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.60 Å
- R-Value Free: 0.242
- R-Value Work: 0.192
- R-Value Observed: 0.194
- Space Group: P 65 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 92.78 | α = 90 |
| b = 92.78 | β = 90 |
| c = 449.17 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| SCALA | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2019-02-06 Deposition Author(s): Papiz, M.Z., Bellini, D.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Biotechnology and Biological Sciences Research Council | United Kingdom | BB/E002609/2 |
| STFC Darebury Laboratory | United Kingdom | -- |
Revision History (Full details and data files)
- Version 1.0: 2019-02-06
Type: Initial release - Version 1.1: 2024-01-17
Changes: Data collection, Database references, Refinement description
