6SMF

THE CRYSTAL STRUCTURE OF TYPE II DEHYDROQUINASE FROM ZYMOMONAS MOBILIS

PDB DOI: https://doi.org/10.2210/pdb6SMF/pdb

Classification: BIOSYNTHETIC PROTEIN
Organism(s): Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2019-08-21 Released: 2020-07-08
Deposition Author(s): Lapthorn, A.J., Roszak, A.W.
Funding Organization(s): Engineering and Physical Sciences Research Council

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.34 Å
R-Value Free: 0.212
R-Value Work: 0.164
R-Value Observed: 0.167

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Biomacromolecular charge chirality detected using chiral plasmonic nanostructures

Rodier, M., Keijzer, C., Milner, J., Karimullah, A., Roszak, A.W., Barron, L.D., Gadegaard, N., Lapthorn, A.J., Kadodwala, M.

(2020) Nanoscale Horiz

DOI: https://doi.org/10.1039/c9nh00525k

Macromolecule Content

Total Structure Weight: 65.79 kDa
Atom Count: 4,526
Modelled Residue Count: 576
Deposited Residue Count: 596
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
3-dehydroquinate dehydratase	A, B, C, D	149	Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821	Mutation(s): 0 Gene Names: aroD, aroQ, ZMO0737, ZMO1_ZMO0737 EC: 4.2.1.10
UniProt
Find proteins for Q5NPJ9 (Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)) Explore Q5NPJ9 Go to UniProtKB: Q5NPJ9
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q5NPJ9
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
FLC Query on FLC Download Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain H [auth B] SDF format, chain J [auth C] SDF format, chain K [auth D] MOL2 format, chain E [auth A] MOL2 format, chain H [auth B] MOL2 format, chain J [auth C] MOL2 format, chain K [auth D]	E [auth A], H [auth B], J [auth C], K [auth D]	CITRATE ANION C₆ H₅ O₇ KRKNYBCHXYNGOX-UHFFFAOYSA-K		Interactions Focus chain E [auth A] Focus chain H [auth B] Focus chain J [auth C] Focus chain K [auth D] Interactions & Density Focus chain E [auth A] Focus chain H [auth B] Focus chain J [auth C] Focus chain K [auth D]
TRS Query on TRS Download Ideal Coordinates CCD File SDF format, chain F [auth A] SDF format, chain L [auth D] MOL2 format, chain F [auth A] MOL2 format, chain L [auth D]	F [auth A], L [auth D]	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C₄ H₁₂ N O₃ LENZDBCJOHFCAS-UHFFFAOYSA-O		Interactions Focus chain F [auth A] Focus chain L [auth D] Interactions & Density Focus chain F [auth A] Focus chain L [auth D]
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain G [auth A] SDF format, chain M [auth D] MOL2 format, chain G [auth A] MOL2 format, chain M [auth D]	G [auth A], M [auth D]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain G [auth A] Focus chain M [auth D] Interactions & Density Focus chain G [auth A] Focus chain M [auth D]
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain I [auth B] MOL2 format, chain I [auth B]	I [auth B]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain I [auth B] Interactions & Density Focus chain I [auth B]