Download MendeleyCrystal structure of Rhodothermus marinus substrate-binding protein at pH 7.5
Nam, K.H.To be published.
6K1Y
Crystal structure of Rhodothermus marinus substrate-binding protein at pH 7.5
- PDB DOI: https://doi.org/10.2210/pdb6K1Y/pdb
- Classification: TRANSPORT PROTEIN
- Organism(s): Rhodothermus marinus DSM 4252
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2019-05-13 Released: 2019-08-21
- Funding Organization(s): National Research Foundation (Korea)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.228
- R-Value Work: 0.178
- R-Value Observed: 0.183
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| ABC-type uncharacterized transport system periplasmic component-like protein | 189 | Rhodothermus marinus DSM 4252 | Mutation(s): 0 Gene Names: Rmar_2176 |  | |
UniProt | |||||
Find proteins for D0MDR1 (Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10)) Explore D0MDR1 Go to UniProtKB: D0MDR1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | D0MDR1 | ||||
Sequence AnnotationsExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.228
- R-Value Work: 0.178
- R-Value Observed: 0.183
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 46.544 | α = 90 |
| b = 48.601 | β = 90 |
| c = 57.821 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data scaling |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| HKL-2000 | data reduction |
| PHENIX | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2019-08-21 Deposition Author(s): Nam, K.H.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Research Foundation (Korea) | Korea, Republic Of | NRF-2017R1D1A1B03033087 |
| National Research Foundation (Korea) | Korea, Republic Of | NRF-2017M3A9F6029736 |
Revision History (Full details and data files)
- Version 1.0: 2019-08-21
Type: Initial release - Version 1.1: 2023-11-22
Changes: Data collection, Database references, Refinement description
